#!/usr/bin/env python3 # -*- coding: utf-8 -*- # (setq python-shell-interpreter (shell-command-to-string "nix-shell --command \"which python3 | tr -d '\n'\"")) import functools import math import numpy as np import vispy import vispy.scene from vispy.scene import visuals import opensimplex class VectorField(object): def eval(self, x: float, y: float, z: float) -> np.array: """Evaluates potential function at a single point (x,y,z). Returns a numpy array of the 3-dimensional vector. """ raise Exception("Not implemented") def grad(self, x: float, y: float, z: float, eps: float=1e-3) -> np.array: """Returns an array with this potential function's gradients. Like eval() this works only at a single point. The gradients are computed numerically using finite differences In the returned array, element (i, j) is gradient of i'th component with respect to j'th component, where components are (X,Y,Z) - i.e. row 0 is (d/dx P_x, d/dy P_x, d/dz P_x). This should be equivalent to the Jacobian evaluated at (x, y, z). Parameters: x -- X coordinate y -- Y coordinate z -- Z coordinate eps -- Optional delta to compute numerical gradient (default 1e-3) Returns: (3,3) numpy array containing gradients at (x,y,z) """ p = self.eval(x, y, z) p_dx = self.eval(x+eps, y, z) p_dy = self.eval(x, y+eps, z) p_dz = self.eval(x, y, z+eps) return (np.stack((p_dx, p_dy, p_dz)) - p).T / eps @staticmethod def curl_3d(grads: np.array) -> np.array: """Computes curl from an array of gradients. 'grads' should have shape (N1, N2, ..., 3, 3). Each 3x3 matrix in should be the Jacobian of the function at some point. Each output vector is the (x,y,z) coordinates of the curl at that corresponding point. Parameters: grads -- numpy array of gradients, shape (..., 3, 3) Returns: numpy array of shape (..., 3) containing curl vectors """ cx = grads[..., 2, 1] - grads[..., 1, 2] cy = grads[..., 0, 2] - grads[..., 2, 0] cz = grads[..., 1, 0] - grads[..., 0, 1] return np.stack((cx, cy, cz), axis=-1) class SimplexPotential(VectorField): """Represents a potential function for a vector field.""" def __init__(self): self.x_spx = opensimplex.OpenSimplex(seed=0) self.y_spx = opensimplex.OpenSimplex(seed=12345) self.z_spx = opensimplex.OpenSimplex(seed=45678) def eval(self, x: float, y: float, z: float) -> np.array: y2 = y + 0.1*math.sin(1*x) + 0.1*math.sin(1.25*z) x2 = x z2 = z f1 = np.array([ self.x_spx.noise3d(x2, y2, z2), self.y_spx.noise3d(x2, y2, z2), self.z_spx.noise3d(x2, y2, z2), ]) f2 = np.array([z*0.5, 0, 0]) return f1 + f2 class TentacleWtf(VectorField): def eval(self, x: float, y: float, z: float) -> np.array: x2 = x + 0.05*math.sin(4*y) + 0.2*math.sin(4.25*z) y2 = y z2 = 0 f = 1.0 x3 = x2*math.cos(f*y2) - z2*math.sin(f*y2) z3 = x2*math.sin(f*y2) + z2*math.cos(f*y2) y3 = y2 f1 = np.array([ x3, y3, z3, ]) return f1 class KindaTwist(VectorField): def eval(self, x: float, y: float, z: float) -> np.array: f = 2.0 x2 = x*math.cos(f*y) - z*math.sin(f*y) z2 = x*math.sin(f*y) + z*math.cos(f*y) y2 = 0 x3 = 0.5*z2 y3 = y2 z3 = 0 f1 = np.array([ x3, y3, z3, ]) return f1 def generate(grid): p = KindaTwist() grads = np.array([p.grad(*pt) for pt in grid]) curl = p.curl_3d(grads) return curl class Data(object): def __init__(self, view): self.use_tubes = False self.view = view s = 0.15 self.s = s count = 8 xs = zs = np.linspace(-s, s, count) ys = np.array([0]) self.points = np.array([i.flatten() for i in np.meshgrid(xs,ys,zs)]).T self.points_old = None if self.use_tubes: self.visual = vispy.scene.visuals.Line( color=(1,1,1,0.75), connect='segments', ) self.view.add(self.visual) self.view.camera = 'turntable' self.update() else: p = self.points points = [p] for i in range(200): print(i) curl = generate(p) p2 = p + curl*0.1*s p = p2 points.append(p) points = np.stack(points, axis=1) / s # points = (count*count, N, 3) where first dimension chooses which # trajectory, and second dimension proceeds along time/iterations # of that trajectory. for traj in points: tube = vispy.scene.visuals.Tube(points=traj, radius=0.4*s) self.view.add(tube) self.view.camera = 'turntable' def update(self, ev=None): if not self.use_tubes: return t = 0 if ev is None else ev.elapsed # Get velocity for current points: curl = generate(self.points) # a1 = self.points a2 = self.points + curl*0.1*self.s lines = np.hstack((a1, a2)).reshape(self.points.shape[0]*2, -1) / self.s self.points_old = np.vstack((self.points_old, lines)) maxpoints = self.points.shape[0] * 200 extra = self.points_old.shape[0] - maxpoints if extra > 0: self.points_old = self.points_old[extra:] self.visual.set_data( pos=self.points_old, #arrows=np.hstack((a1, a2)), ) self.points = a2 # self.scatter = visuals.Markers() # self.scatter.set_data(self.d, edge_color=None, face_color=(1, 0.5, 1, .5), size=4) # view.add(self.scatter) #m = np.array([[np.cos(t), np.sin(t*1.01), np.cos(t*1.02)]]) #d2 = self.d*m #self.scatter.set_data(d2, edge_color=None, face_color=(1, 0.5, 1, .5), size=4) def main(): # # Make a canvas and add simple view # canvas = vispy.scene.SceneCanvas(keys='interactive', show=True) view = canvas.central_widget.add_view() import sys # add a colored 3D axis for orientation axis = visuals.XYZAxis(parent=view.scene) timer = vispy.app.Timer() da = Data(view) # Problem is how slow update() is: timer.connect(da.update) timer.start(0.05) if sys.flags.interactive != 1: vispy.app.run() if __name__ == '__main__': main()